Protocols

Penn Protocols

UCSD Protocols

USC Protocols

CM aRNA Protocol

Version 1

Human Cardiomyocyte Dissociation

Version 1

Version 2

Version 3

Version 4

Truseq Stranded Library

Version 1

Version 2

UCSD Protocols

Version 1

Version 2

USC Cell Collection Protocol 

Version 1

Version 2

USC Ephys Solutions Protocol

Version 1

USC LibraryPrep cDNASynthesis Protocol 

Version 1

Version 2

Version 3

USC Organotypic Slice Culture Protocol

Version 1

 

RNAseq Analysis 

The NGS analysis of the SCAP-T samples is carried out by PennSCAP-T pipeline. Click here to access the user guide that describes how the SCAP-T samples were processed.

The PennSCAP-T pipeline version that has been used to process the SCAP-T samples can be downloaded here

To get the more information and to download the latest release of PennSCAP-T Pipeline please visit: https://github.com/safisher/ngs/wiki.

 

 

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