Links

PUBLICATIONS AND PROGRAMS

  • Spaethling JM, Na YJ, Lee J, Ulyanova AV, Baltuch GH, Bell TJ, Brem S, Chen HI, Dueck H, Fisher SA, Garcia MP, Khaladkar M, Kung DK, Lucas Jr TH, O’Rourke DM, Stefanik D, Wang J, Wolf JA, Bartfai T, Grady MS, Sul JY, Kim J, Eberwine JH. "Primary cell culture of live neurosurgically resected aged adult human brain cells and single cell transcriptomics". Cell Reports. 2017, 18: 791-803.
  • Hannah R. Dueck, Rizi Ai, Adrian Camarena, Bo Ding, Reymundo Dominguez, Oleg V. Evgrafov, Jian-Bing Fan, Stephen A. Fisher, Jennifer S. Herstein, Tae Kyung Kim, Jae Mun (Hugo) Kim, Ming-Yi Lin, Rui Liu, William J. Mack, Sean McGroty, Joseph D. Nguyen, Neeraj Salathia, Jamie Shallcross, Tade Souaiaia, Jennifer M. Spaethling, Christopher P. Walker, Jinhui Wang, Kai Wang, Wei Wang, Andre Wildberg, Lina Zheng, Robert H. Chow, James Eberwine, James A. Knowles, Kun Zhang, Junhyong Kim. "Assessing characteristics of RNA amplification methods for single cell RNA sequencing". BMC Genomics. 2016; 17: 966.
  • Lake BB, Ai R, Kaeser GE, Salathia NJ, Yung YC, Liu R, Wildberg A, Gao D, Fung HL, Chen S, Vijayaraghavan R, Wong J, Chen A, Sheng X, Kaper F, Shen R, Ronaghi M, Fan JB, Wang W, Chun J, Zhang K. "Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain". Science 352, 1586-1590 (2016).
  • Dueck H, Khaladkar M, Kim TK, Spaethling JM, Francis C, Suresh S, Fisher SA, Seale P, Beck SG, Bartfai T, Kuhn B, Eberwine J, and Kim J "Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation". Genome Biology 16:122 (2015).
  • Lovatt D, Ruble BK, Lee J, Dueck H, Kim TK, Fisher SA, Francis C, Spaethling JM, Wolf JA, Grady MS, Ulyanova AV, Yeldell SB, Griepenburg JC, Buckley PT, Kim J, Sul JY, Dmochowski IJ, and Eberwine J. "Transcriptome in vivo analysis (TIVA) of spatially de ned single cells in live tissue". Nature Methods Feb;11(2):190-6 (2014).
  • Zhu Q, Fisher SA, Dueck H, Middleton S, Khaladkar M, Na YJ, Kim J "KimLabIDV: Application for Interactive RNA-Seq Data Analysis and Visualization". (submitted)
  • Zhu, Q., Fisher S.A., Shallcross J., Kim J. "VERSE: a versatile and efficient RNA-Seq read counting tool". (submitted)

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