Detailed experimental protocols that are used by each center for single cell analysis can be downloaded here:

  1. Penn Protocols
  2. USC Protocols
  3. UCSD


The NGS analysis of the SCAP-T samples is carried out by PennSCAP-T pipeline. Click here to download the user guide that describes how the SCAP-T samples were processed and instructions on how to obtain the PennSCAP-T pipeline



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